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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19372744_19375963_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19372744 - 19375963
Intron Length:
3220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GAAGCTATAATA
Flanking Amino Acid:
YGRKGHGLSKGPRPAVFLQH
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
70.4
42.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
38.9
-1.2
3.6
54.5
49.7
Minor BPS
48.3
-0.1
1.7
55.05
37.6

Associated Gene:

Gene:
LIPA
Ensembl Gene ID:
ENSAPLG00000018116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037938
19364753 - 19377800
13048