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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1940193_1983662_R

Intron Information:

Intron Rank:
143206
Intron Class:
major
Intron Phase:
Intron Coordinates:
1940193 - 1983662
Intron Length:
43470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
AACTATTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
78.5
0.64
0.9
74.8
33.6
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
59
0.36
1.5
71.01
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042862
1880652 - 1996785
116134
ENSAPLT00000028627
1924494 - 1999657
75164
ENSAPLT00000017882
1901217 - 1996785
95569
ENSAPLT00000044637
1833733 - 1996785
163053