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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19404253_19405299_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19404253 - 19405299
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCG
5'SS Class:
major
3'SS Sequence:
TTTGAATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTGTTTTGAATT
Flanking Amino Acid:
NITFGWLTDRRCLKKHRHFC
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.3
41.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.7
0.69
0.9
74
40.3
Minor 5ss
29.6
-2.3
3.4
39
46.3
Minor BPS
59.3
0.37
1.4
71.5
40.5

Associated Gene:

Gene:
SLC16A12
Ensembl Gene ID:
ENSAPLG00000003860
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003968
19402949 - 19428460
25512