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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19405892_19408149_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19405892 - 19408149
Intron Length:
2258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAG
U12 Branch Point Sequence:
TCAGAATTAAGC
Flanking Amino Acid:
HLYLSLGVLTGLGFALCYSP
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
59
0.22
1.5
67.7
36.5
Major PPT
88.6
0.87
0.7
80.8
31.2
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
44.1
-0.4
2.1
53.12
44.1

Associated Gene:

Gene:
SLC16A12
Ensembl Gene ID:
ENSAPLG00000003860
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003968
19402949 - 19428460
25512