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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19408294_19409522_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19408294 - 19409522
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTGCTATTAACT
Flanking Amino Acid:
SIVDCATMLCAPLGSLISNH
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
81.4
31.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
78.1
0.63
1
79.4
32.9
Minor 5ss
42.5
-0.8
2.8
56.3
42.5
Minor BPS
66.6
0.6
1.6
82.43
38.5

Associated Gene:

Gene:
SLC16A12
Ensembl Gene ID:
ENSAPLG00000003860
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003968
19402949 - 19428460
25512