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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19409627_19410516_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19409627 - 19410516
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
TTATCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCATGTTATCT
Flanking Amino Acid:
LVTICTRAVTRCISIFFVEF
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.5
0.66
0.8
73.5
36.8
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
47.9
-0
2.3
71.71
45.4

Associated Gene:

Gene:
SLC16A12
Ensembl Gene ID:
ENSAPLG00000003860
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003968
19402949 - 19428460
25512