About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19410713_19427724_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19410713 - 19427724
Intron Length:
17012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
CCCTCTCTACCT
Flanking Amino Acid:
DLQDGAKCKLDGEQPTGWAT
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
87.5
0.84
0.7
83.2
25.1
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
47.6
-0.1
2
63.42
47.2

Associated Gene:

Gene:
SLC16A12
Ensembl Gene ID:
ENSAPLG00000003860
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003968
19402949 - 19428460
25512