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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19444610_19448910_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19444610 - 19448910
Intron Length:
4301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGCTTTTCAATT
Flanking Amino Acid:
SIARMCALNENIDKVVFVGN
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.2
0.72
0.9
75.8
37.7
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
58.7
0.35
1.5
71.95
39.8

Associated Gene:

Gene:
PANK1
Ensembl Gene ID:
ENSAPLG00000004016
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004131
19444483 - 19469782
25300