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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19449035_19449421_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19449035 - 19449421
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTTCCTCACAC
Flanking Amino Acid:
FGLQGSAVASSFGHMMSKEK
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
77.8
0.62
0.8
73
30.8
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
59.2
0.27
1.9
76.17
39.8

Associated Gene:

Gene:
PANK1
Ensembl Gene ID:
ENSAPLG00000004016
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004131
19444483 - 19469782
25300