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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19449599_19451937_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19449599 - 19451937
Intron Length:
2339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTGTTCTGAAGG
Flanking Amino Acid:
KDNYKRVTGSSLGGGTFLGL
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.7
0.62
0.9
69.7
41.5
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
49.3
-0.1
1.9
55.19
46.2

Associated Gene:

Gene:
PANK1
Ensembl Gene ID:
ENSAPLG00000004016
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004131
19444483 - 19469782
25300