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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19452192_19460824_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19452192 - 19460824
Intron Length:
8633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
TGTTCTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTATTAATT
Flanking Amino Acid:
AYKFEEDFRTIADLQLHKLD
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
70.6
35.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.7
0.74
0.9
74.2
40.2
Minor 5ss
38.6
-1.3
3.1
48.8
47.3
Minor BPS
71.8
0.76
1.5
86.09
33.4

Associated Gene:

Gene:
PANK1
Ensembl Gene ID:
ENSAPLG00000004016
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004131
19444483 - 19469782
25300