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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19461178_19468663_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19461178 - 19468663
Intron Length:
7486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
CCCCCATCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCAAA
U12 Branch Point Sequence:
TCCTCCCAAACC
Flanking Amino Acid:
SMKLIVHKQRSFPWFGMDIG
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
50.1
0
1.3
58.9
35.8
Major PPT
64.4
0.32
0.7
61.5
27.7
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
52.7
0.07
2.1
66.82
45

Associated Gene:

Gene:
PANK1
Ensembl Gene ID:
ENSAPLG00000004016
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004131
19444483 - 19469782
25300