About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19563299_19572605_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19563299 - 19572605
Intron Length:
9307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTTTTGATG
Flanking Amino Acid:
IMTLCVISIDRRPRGMVVEP
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.9
0.45
1.1
72.9
37.2
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
65.4
0.34
1.2
67.41
34.5

Associated Gene:

Gene:
HTR7
Ensembl Gene ID:
ENSAPLG00000021064
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019042
19562537 - 19573132
10596