Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19582341_19584018_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19582341 - 19584018

Intron Length:

1678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTCCG

5'SS Class:

major

3'SS Sequence:

TTTTGTTTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTACGAT

U12 Branch Point Sequence:

CTGGACAAAACA

Flanking Amino Acid:

LQSLLEAAARLGYSAVALNH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.5

0.3

1.3

53.6

45.1

Major BPS

0.3

1.4

60.8

45.4

Major PPT

89.5

0.89

0.7

88.9

28.2

Minor 5ss

-2.2

2.8

38.3

39.4

Minor BPS

42.2

-0.6

2.1

52.67

45.3

Associated Gene:

Gene:

RPP30

Ensembl Gene ID:

ENSAPLG00000009959

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042896

19582259 - 19597317

15059

ENSAPLT00000010374

19582259 - 19601089

18831