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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19593274_19594311_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19593274 - 19594311
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAGGAT
U12 Branch Point Sequence:
CTTTTTGCCAGT
Flanking Amino Acid:
ISLMQICKGKLKMFLTWLLI
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
46.8
-0.2
1.6
45.5
47.5
Major PPT
80.4
0.68
0.9
76.3
32.3
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
36.8
-0.9
2.5
58.3
45.7

Associated Gene:

Gene:
RPP30
Ensembl Gene ID:
ENSAPLG00000009959
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042896
19582259 - 19597317
15059