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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19593274_19596767_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19593274 - 19596767
Intron Length:
3494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAC
U12 Branch Point Sequence:
TGACAGATAAGC
Flanking Amino Acid:
ISLMQICKGKNIVISSAAER
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
57
0.17
1.3
51.4
43.9
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
36.9
-1
2.4
47.8
40.8

Associated Gene:

Gene:
RPP30
Ensembl Gene ID:
ENSAPLG00000009959
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010374
19582259 - 19601089
18831