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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19597253_19598383_F

Intron Information:

Intron Rank:
9
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
19597253 - 19598383
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACAAAGGTGGCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATCCTGAACA
Flanking Amino Acid:
ELRGPYDVANLGLLFGLSES
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
48.7
-0
1.2
38.9
43.5
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
73.9
0.74
1.4
78.69
36.9

Associated Gene:

Gene:
RPP30
Ensembl Gene ID:
ENSAPLG00000009959
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010374
19582259 - 19601089
18831