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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19598464_19600621_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19598464 - 19600621
Intron Length:
2158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATGAGCT
Flanking Amino Acid:
TNCRATILHGETRKSACGVV
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.3
0.66
0.9
70.6
44.1
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
52.2
0.15
2
79.64
41.5

Associated Gene:

Gene:
RPP30
Ensembl Gene ID:
ENSAPLG00000009959
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010374
19582259 - 19601089
18831