About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19605548_19605696_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
19605548 - 19605696

Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGA|GTAAGTGCC

5'SS Class:
major

3'SS Sequence:
CTTGCACCCCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CACTGAT

U12 Branch Point Sequence:
GTGTCTTGCACC

Flanking Amino Acid:
CEADLNARDREGDTPMHDAV

Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.2
0.59
1.1
69.1
37.3

Major BPS
71.2
0.53
1
61
37.5

Major PPT
64.9
0.33
0.8
55.5
35.3

Minor 5ss
35.2
-1.7
3.2
41.6
38.8

Minor BPS
49.9
-0
1.9
63.7
42

Associated Gene:

Gene:
ANKRD1

Ensembl Gene ID:

Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19603965 - 19612020
8056