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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19606031_19606836_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19606031 - 19606836
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCCTA
5'SS Class:
major
3'SS Sequence:
TTTCCTGCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTACTTTTATT
Flanking Amino Acid:
AGAQLELKDMLQSTALHWAC
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
63.3
42.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
73.6
0.53
0.8
68.9
31.7
Minor 5ss
47.7
-0.2
2.8
61.5
45.3
Minor BPS
61.9
0.46
1.6
78.73
37.4

Associated Gene:

Gene:
ANKRD1
Ensembl Gene ID:
ENSAPLG00000010068
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010505
19603965 - 19612020
8056