About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19606936_19607627_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19606936 - 19607627
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACTCT
5'SS Class:
major
3'SS Sequence:
TTTTAATTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTGACA
Flanking Amino Acid:
DKGDPNVCDEFKRTALHRAC
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
65.9
40.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.3
0.61
1
73.3
40.8
Minor 5ss
44.8
-0.6
3.2
65.8
45.3
Minor BPS
65
0.47
1.8
81.15
33.4

Associated Gene:

Gene:
ANKRD1
Ensembl Gene ID:
ENSAPLG00000010068
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010505
19603965 - 19612020
8056