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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19704576_19709808_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19704576 - 19709808
Intron Length:
5233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTCTAGTTAATA
Flanking Amino Acid:
VHETNPLEMLRLDNTLEEII
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
66.7
0.38
1.1
69.9
34.4
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
55.4
0.16
2.2
71.87
40.7

Associated Gene:

Gene:
PCGF5
Ensembl Gene ID:
ENSAPLG00000010307
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010757
19694392 - 19720962
26571