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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19709865_19709986_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19709865 - 19709986
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TGATGTTAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATGTTAACT
Flanking Amino Acid:
IFKLVPGLREQELQREIEFW
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
73.2
39.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58.9
0.2
1.1
52.5
46
Minor 5ss
45.7
-0.5
2.7
57.1
40.8
Minor BPS
59.5
0.38
2.1
80
42.1

Associated Gene:

Gene:
PCGF5
Ensembl Gene ID:
ENSAPLG00000010307
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010757
19694392 - 19720962
26571