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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19710047_19713266_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19710047 - 19713266
Intron Length:
3220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTTT
5'SS Class:
major
3'SS Sequence:
GCATATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTACACTTAACT
Flanking Amino Acid:
KKNKPQENGQDESPKADKPK
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
77.5
33.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
75.6
0.58
1
68.3
41.8
Minor 5ss
37.3
-1.4
3.5
55.5
48.6
Minor BPS
74.7
0.85
1.4
88.1
36

Associated Gene:

Gene:
PCGF5
Ensembl Gene ID:
ENSAPLG00000010307
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010757
19694392 - 19720962
26571