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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19713416_19715109_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19713416 - 19715109
Intron Length:
1694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAATTTCTAACA
Flanking Amino Acid:
NGQSGDNVVKGLMKKFIRCS
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73
0.52
0.9
70.2
41.3
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
59.8
0.3
1.6
69.81
36

Associated Gene:

Gene:
PCGF5
Ensembl Gene ID:
ENSAPLG00000010307
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010757
19694392 - 19720962
26571