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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19715209_19716579_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19715209 - 19716579
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATTTG
5'SS Class:
major
3'SS Sequence:
GTTATATTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTGTCTTACTG
Flanking Amino Acid:
LKLKLPSSYELDVLCNGEIM
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
72.3
40
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
69.9
0.45
1.1
72.5
41.7
Minor 5ss
42.1
-0.9
3.2
57.9
46.7
Minor BPS
57.9
0.11
1.8
66.07
42.7

Associated Gene:

Gene:
PCGF5
Ensembl Gene ID:
ENSAPLG00000010307
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010757
19694392 - 19720962
26571