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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19716670_19717932_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19716670 - 19717932
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
TCATGAAATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAAAT
Flanking Amino Acid:
MTRWRLRGENSCGPCLQMDL
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
72.1
37.7
Major BPS
100
1.24
0.5
100
0
Major PPT
60.3
0.23
1
56.8
42.5
Minor 5ss
36.1
-1.6
3.4
49.3
40.5
Minor BPS
65.5
0.57
1.8
88.14
35.9

Associated Gene:

Gene:
PCGF5
Ensembl Gene ID:
ENSAPLG00000010307
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010757
19694392 - 19720962
26571