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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19717991_19718589_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19717991 - 19718589
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAGCC
5'SS Class:
major
3'SS Sequence:
ATCTCCTTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGCCTCTTATCT
Flanking Amino Acid:
LCQLHWFVSNVSVSELLIFA
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
61.5
35.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
78.5
0.64
0.8
73
31.1
Minor 5ss
31.9
-2.1
3.3
40.1
39.8
Minor BPS
59.5
0.38
1.6
73.71
43

Associated Gene:

Gene:
PCGF5
Ensembl Gene ID:
ENSAPLG00000010307
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010757
19694392 - 19720962
26571