Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19762580_19763365_F

Intron Information:

Intron Rank:

141633

Intron Class:

major

Intron Phase:

Intron Coordinates:

19762580 - 19763365

Intron Length:

786

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGTTG

5'SS Class:

major

3'SS Sequence:

CTCTGCTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTTAC

U12 Branch Point Sequence:

ACTTCCTTACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

41.4

Major BPS

68.9

0.47

59.6

38.6

Major PPT

82.1

0.72

0.8

76.1

32.5

Minor 5ss

46.5

-0.4

3.1

64.1

47.4

Minor BPS

71.3

0.65

1.6

76.53

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026285

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044788

19761894 - 19764646

2753