About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19771064_19774693_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19771064 - 19774693
Intron Length:
3630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTCGG
5'SS Class:
major
3'SS Sequence:
TGTGTTTACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTAGT
Flanking Amino Acid:
LPAASSAAAGDLDFPLVCQG
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
54.5
49.7
Major BPS
100
1.24
0.5
100
0
Major PPT
75.2
0.57
1
73.6
40.9
Minor 5ss
31.8
-2.1
3.1
32
42.4
Minor BPS
58.5
0.35
2.2
85.58
40.4

Associated Gene:

Gene:
HECTD2
Ensembl Gene ID:
ENSAPLG00000010621
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028271
19770812 - 19803216
32405