About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19785582_19786971_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19785582 - 19786971
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
ATGAGAGTAACT
Flanking Amino Acid:
DHHFLVHWSKKISQRRFKQV
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
73.1
30.9
Major BPS
68.9
0.47
1
75
30
Major PPT
86.1
0.81
0.7
85.5
29.2
Minor 5ss
33.9
-1.8
3
40.1
40
Minor BPS
42.2
-0.5
2.5
64.17
45.8

Associated Gene:

Gene:
HECTD2
Ensembl Gene ID:
ENSAPLG00000010621
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039584
19775494 - 19803216
27723
ENSAPLT00000028271
19770812 - 19803216
32405
ENSAPLT00000011065
19770812 - 19803216
32405