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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19787121_19788416_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19787121 - 19788416
Intron Length:
1296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AGTACTTTGAAA
Flanking Amino Acid:
PSATKVLALFNAANSLISPP
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
74.3
37
Major BPS
74.8
0.62
1
67
39.8
Major PPT
88.5
0.87
0.7
85.2
29.1
Minor 5ss
46.6
-0.3
3.1
67.8
38.4
Minor BPS
55.6
0.17
1.4
63.34
36.1

Associated Gene:

Gene:
HECTD2
Ensembl Gene ID:
ENSAPLG00000010621
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032346
19770812 - 19803216
32405
ENSAPLT00000028271
19770812 - 19803216
32405
ENSAPLT00000011065
19770812 - 19803216
32405
ENSAPLT00000039584
19775494 - 19803216
27723