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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19794658_19796058_F

Intron Information:

Intron Rank:
14
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
19794658 - 19796058
Intron Length:
1401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTGACCCATATAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTGCCTTTAACA
Flanking Amino Acid:
NYSEFRLVGALMGLAVYNSI
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
61.7
0.26
0.9
54.7
35.5
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
77.7
0.87
1.1
80.71
35

Associated Gene:

Gene:
HECTD2
Ensembl Gene ID:
ENSAPLG00000010621
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039584
19775494 - 19803216
27723
ENSAPLT00000032346
19770812 - 19803216
32405
ENSAPLT00000028271
19770812 - 19803216
32405
ENSAPLT00000011065
19770812 - 19803216
32405