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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19796791_19797801_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19796791 - 19797801
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCATTAAG
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCCAGAACT
Flanking Amino Acid:
VEEDFYSTFQVFQEEFGVIK
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
70.7
41.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
88.5
0.87
0.6
83.5
24.9
Minor 5ss
30.6
-2.2
2.5
34
41.4
Minor BPS
73.4
0.81
1.7
94.52
31.9

Associated Gene:

Gene:
HECTD2
Ensembl Gene ID:
ENSAPLG00000010621
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028271
19770812 - 19803216
32405
ENSAPLT00000011065
19770812 - 19803216
32405
ENSAPLT00000039584
19775494 - 19803216
27723
ENSAPLT00000032346
19770812 - 19803216
32405