About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19798255_19799457_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19798255 - 19799457
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATACTTAATT
Flanking Amino Acid:
HSVCASYALLLLRPEEVEIL
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.3
0.53
1
70
40.8
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
78.2
0.96
1.4
90.18
33.4

Associated Gene:

Gene:
HECTD2
Ensembl Gene ID:
ENSAPLG00000010621
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032346
19770812 - 19803216
32405
ENSAPLT00000028271
19770812 - 19803216
32405
ENSAPLT00000011065
19770812 - 19803216
32405
ENSAPLT00000039584
19775494 - 19803216
27723