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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19799574_19800240_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19799574 - 19800240
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGCTTG
5'SS Class:
major
3'SS Sequence:
ACCCTGAACATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCTCCTTTGACC
Flanking Amino Acid:
EGYQKTDLTIRYFWDVVLGF
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
61
46.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
53.5
0.08
0.9
46.7
33.7
Minor 5ss
46.6
-0.4
3.2
64.3
47.1
Minor BPS
71.5
0.66
1.2
75.04
35.8

Associated Gene:

Gene:
HECTD2
Ensembl Gene ID:
ENSAPLG00000010621
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032346
19770812 - 19803216
32405
ENSAPLT00000028271
19770812 - 19803216
32405
ENSAPLT00000011065
19770812 - 19803216
32405
ENSAPLT00000039584
19775494 - 19803216
27723