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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19800385_19802216_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19800385 - 19802216
Intron Length:
1832

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTTACTTAATA
Flanking Amino Acid:
KISKSETSTNWLPVAHTCFN
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
1
92.3
24.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
82.5
0.73
0.9
81.2
36.5
Minor 5ss
31.5
-2.1
4
48.3
41.8
Minor BPS
75.5
0.8
1.4
81.44
33.5

Associated Gene:

Gene:
HECTD2
Ensembl Gene ID:
ENSAPLG00000010621
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032346
19770812 - 19803216
32405
ENSAPLT00000028271
19770812 - 19803216
32405
ENSAPLT00000011065
19770812 - 19803216
32405
ENSAPLT00000039584
19775494 - 19803216
27723