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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19836649_19837225_F

Intron Information:

Intron Rank:
137515
Intron Class:
major
Intron Phase:
Intron Coordinates:
19836649 - 19837225
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
56.3
0.16
1.5
57.4
49.1
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024047
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023298
19835701 - 19838906
3206