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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19883324_19884278_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19883324 - 19884278
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTTTC
5'SS Class:
major
3'SS Sequence:
TTGCATTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATGAAAA
Flanking Amino Acid:
AIKGKTDVCIVLLQHGAEPT
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
76.8
32.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
70.7
0.47
1.1
71.4
38.3
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
56
0.19
1.9
71.17
40.3

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938