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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19884732_19885051_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19884732 - 19885051
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTTTCATATCT
Flanking Amino Acid:
YKKDELLESARSGNEEKMMS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
59.2
0.37
1.9
81.49
39.8

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938