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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19885128_19886303_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19885128 - 19886303
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
TCTGTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTGTGTTACT
Flanking Amino Acid:
VNCHASDGRKSTPLHLAAGY
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
47.4
-0.1
2.6
79.44
43

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938