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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19886399_19887562_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19886399 - 19887562
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTTCG
5'SS Class:
major
3'SS Sequence:
CTTTCCTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
CTTTCCTGTATA
Flanking Amino Acid:
HGADVHAKDKGDLVPLHNAC
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
63.3
43.9
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
76.9
0.61
0.9
72.5
32.3
Minor 5ss
38.7
-1.3
3
41.4
45
Minor BPS
59
0.28
1.8
71.86
40.2

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938