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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19890573_19891074_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19890573 - 19891074
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGCTT
5'SS Class:
major
3'SS Sequence:
ATGTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATGCTAAATT
Flanking Amino Acid:
KHPQTHETALHCAAASPYPK
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
68
42.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.7
0.76
0.8
81.3
35.7
Minor 5ss
36.9
-1.5
3.5
53.5
44.7
Minor BPS
53.9
0.2
2.1
73.78
43.3

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938