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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19894990_19895377_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19894990 - 19895377
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TACGACCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATCCTTTACG
Flanking Amino Acid:
GRHSTPLHLAAGYNNLEVAE
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.6
0.44
1
58.5
42.5
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
68.4
0.43
1.7
70.98
41.5

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938