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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19895488_19896208_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19895488 - 19896208
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATATC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GTGGCTTTATTT
Flanking Amino Acid:
IPLHNAASYGHVDVAALLIK
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.6
35.9
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
39.2
-1.2
2.9
46
42.5
Minor BPS
53
0.17
1.7
67.82
43.9

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938