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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19896398_19897182_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19896398 - 19897182
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTCTTATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATATTTTAATA
Flanking Amino Acid:
EGQTPLDLVTADDVSALLTA
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
72.7
38.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.9
0.65
0.8
78.5
34
Minor 5ss
36.2
-1.6
3.3
53.7
43.8
Minor BPS
68.5
0.58
1.2
72.59
33.2

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938