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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19898836_19899788_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19898836 - 19899788
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACACT
5'SS Class:
major
3'SS Sequence:
GTTACATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
AGTTCCTGAAAG
Flanking Amino Acid:
GVERLISGQQGLNPYLTLNT
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
70.4
39.7
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
72.7
0.51
0.9
65.2
40.1
Minor 5ss
47.5
-0.2
2.7
67.2
43.7
Minor BPS
61.5
0.22
1.7
65.56
41.3

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938