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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19899887_19900351_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19899887 - 19900351
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTCAATCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AAATTCTCAATC
Flanking Amino Acid:
DKEFQSVEEEMQSTVREHRD
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.8
0.63
0.9
74
35.3
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
58.2
0.24
1.5
63.05
36

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938