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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19900427_19901445_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19900427 - 19901445
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATATTTTAACT
Flanking Amino Acid:
GVFNRYNILKIQKVCNKKLW
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1.1
78.4
32.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.5
0.75
0.8
81
36.2
Minor 5ss
46
-0.4
2.6
61.1
43.8
Minor BPS
75.1
0.87
1.2
85.48
34.3

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938