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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19901552_19902398_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19901552 - 19902398
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
TTCCTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
AGTACTTTAAAC
Flanking Amino Acid:
NHANERMLFHGSPFVNAIIH
Intron Amino Acid Position:
975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.7
36.1
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
81
0.7
0.7
80.7
24.5
Minor 5ss
33
-1.9
3
38.6
41
Minor BPS
63.1
0.39
1.4
67.96
36.8

Associated Gene:

Gene:
TNKS2
Ensembl Gene ID:
ENSAPLG00000011056
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011614
19883071 - 19904008
20938